Prepare workspace
An iOS multi-boot can rapidely become a mess, it must be done in a structured way.
Create a folder named "[Device] Multi-Boot" in a place you will remember on your computer.
In that folder, create a new folder for each secondary iOS versions that you plan to install on the device. In my case, I will only create an "iOS 6.1.3" folder.
In each iOS folders, create two folders, "Stock" and "Patched". The "Stock" folder will contains original files and "Patched" folder will contains modified files.
From the extracted .ipsw file, transfert the kernelcache file to the "Stock" folder of the corresponding iOS version.
Go to /Firmware/all_flash/allflash.[BoardID].[Build Type] and copy the following files to the "Stock" folder created previously.
applelogo.[...].img3
recoverymode.[...].img3
DeviceTree.[...].img3
iBoot.[...].img3
LLB.[...].img3
manifest
The content of the "Stock" folder should be similar as the following screenshot.